Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs13071960 | chr3:48367537 | A/G | 2.88E-5 | 502 | 37.47 | 38.83 | 22.42 | KM Plot |
KIRC | rs13079728 | chr3:48339360 | A/G | 3.82E-5 | 505 | 37.53 | 37.77 | 21.12 | KM Plot |
KIRC | rs13081169 | chr3:48356797 | G/A | 7.7E-6 | 505 | 37.6 | 37.77 | 19.13 | KM Plot |
KIRC | rs13081633 | chr3:48357281 | A/G | 7.21E-6 | 505 | 37.53 | 37.77 | 19.13 | KM Plot |
KIRC | rs13082158 | chr3:48372470 | T/C | 1.36E-5 | 491 | 37.42 | 39.03 | 21.73 | KM Plot |
KIRC | rs13082859 | chr3:48344675 | C/T | 7.7E-6 | 504 | 37.6 | 37.77 | 19.13 | KM Plot |
KIRC | rs13084616 | chr3:48339699 | A/G | 1.86E-5 | 509 | 18.4 | 37.77 | 37.53 | KM Plot |
KIRC | rs13085251 | chr3:48340045 | C/T | 4.08E-5 | 505 | 37.6 | 37.77 | 21.12 | KM Plot |
KIRC | rs13087929 | chr3:48240289 | G/A | 1.28E-5 | 498 | 37.7 | 37.02 | 21.12 | KM Plot |
KIRC | rs13090538 | chr3:48370769 | A/C | 5.59E-5 | 509 | 37.47 | 38.83 | 21.73 | KM Plot |
KIRC | rs13095983 | chr3:48354211 | G/A | 7.7E-6 | 505 | 37.6 | 37.77 | 19.13 | KM Plot |
KIRC | rs13097450 | chr3:48267825 | T/C | 2.05E-5 | 493 | 37.75 | 37.47 | 21.12 | KM Plot |
KIRC | rs13100815 | chr3:48287449 | A/C | 2.05E-5 | 493 | 37.7 | 37.77 | 21.12 | KM Plot |
KIRC | rs13126680 | chr4:186324841 | T/A | 5.84E-7 | 509 | 3.53 | 37.77 | 37.18 | KM Plot |
KIRC | rs13192365 | chr6:25993968 | T/C | 1.42E-8 | 502 | 37.6 | 36.87 | 3.37 | KM Plot |